SNP Profiles matching ICS 1

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AG	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
1._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
2._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
3._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
4._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
5._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
6._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
7._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
8._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
9._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
10._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
11._PA_70_[PER]	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
12._GC-04-053-3-17	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
13._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
14._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
15._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
16._MARPER_45	TT	AA	GG	CT	-	AA	CC	-	CT	-	AA	AA	-	AG
17._RUQ_847	TT	AG	GG	CT	TT	AA	CC	TT	CT	CT	AA	AA	TT	AG
18._RUQ_847	_	AA	GG	CT	_	_	_	TT	_	_	_	_	TT	AG
19._RUQ_817	_	AA	GG	CT	_	_	_	TT	_	_	_	_	TT	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
1._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
2._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
3._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
4._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
5._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
6._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
7._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
8._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
9._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
10._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
11._PA_70_[PER]	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
12._GC-04-053-3-17	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
13._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	_	TT	TT	CC
14._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	_	TT	TT	CC
15._ICS_1	TT	AA	GG	TT	CC	_	GT	GG	TT	AC	CC	TT	TT	CC
16._MARPER_45	TT	AA	GG	-	CC	-	GT	GG	TT	-	CC	-	TT	CC
17._RUQ_847	TT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	TT	CT	CC
18._RUQ_847	_	_	_	_	CC	CG	GT	_	TT	AA	CC	TT	TT	CC
19._RUQ_817	_	_	_	_	CC	CG	GT	_	TT	AA	CC	TT	TT	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
1._ICS_1	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
2._ICS_1	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
3._ICS_1	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
4._ICS_1	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
5._ICS_1	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
6._NA	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
7._NA	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
8._NA	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
9._NA	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
10._NA	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
11._PA_70_[PER]	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
12._GC-04-053-3-17	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
13._ICS_1	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
14._NA	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
15._ICS_1	_	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
16._MARPER_45	AG	GG	-	CT	AG	-	-	-	GT	-	AT	-	X_X	X_X
17._RUQ_847	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
18._RUQ_847	AG	_	AT	CT	AG	CG	AA	CC	GT	AA	_	_	X_X	X_X
19._RUQ_817	AG	_	AT	CT	AG	CG	AA	CC	GT	AA	_	_	X_X	X_X

Input profile: ICS_1 RUQ_847

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._ICS_1

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

2._ICS_1

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

3._ICS_1

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

4._ICS_1

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

5._ICS_1

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._ICS_1 NA

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

7._ICS_1 NA

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._ICS_1 NA

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._ICS_1 NA

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

10._ICS_1 NA

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

11._PA_70_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

12._PA_70_[PER] GC-04-053-3-17

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1 (roxo)

13._ICS_1

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

14._ICS_1 NA

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

15._ICS_1

98.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

16._MARPER_45

98.1 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 251A

Dapeng Zhang, 2014

17._ICS_1 RUQ_847

96.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

18._ICS_1 RUQ_847

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._ICS_5 RUQ_817

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25